I find a couple or errors

Failed to load mods: Error in assignID, technology with name 'hightech2' does not exist.

Source: enrichment1 (technology).

Mods to be disabled:
Dp77s-FactorioPlus-Refining

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Failed to load mods: Error in assignID, technology with name ...

Don't know if possible but a crafting machine like applied energistics that have a storage chest, doing multiple crafting at the same time with internal buffer and multiple input and output, a multitasking assembler.

For compatibility i think miniloader and bulk rail loader.

For enemies a boss ...

These are my ideas/suggestion
First of all the mekanism style refining is great, this modpack is very op but in other hand very expensive for materials, i think have good balance.
I like the idea of a very fast big furnace that use other product to work like oil or similar, or atomic furnace that ...